All publications of the group
Original Peer-Reviewed Research Papers Since At Hohenheim
| Publication | Links |
|---|---|
| Binmöller L., Volkert C., Kiefer C., Zühl L., Slawinska M.W., Loreth A., Nauerth B.H., Ibberson D., Martinez R., Mandakova T.M., Zipper R. & Schmidt A. 2024. Differential expression and evolutionary diversification of RNA helicases in Boechera sexual and apomictic reproduction. J. Exp. Bot. erae026, doi: 10.1093/jxb/erae026. | [journal] [pdf] [SI] |
Pollmann M., Kuhn D., König C., Homolka I., Paschke S., Reinisch R., Schmidt A., Schwabe N., Weber J., Gottlieb Y. & Steidle J.L.M.* 2023. New species based on the biological species concept within the complex of Lariophagus distinguendus (Hymenoptera, Chalcidoidea, Pteromalidae), a parasitoid of household pests. Ecol. Evol. 13: e10524. doi: 10.1002/ece3.10524. | [journal] [pdf] |
| Haas-Renninger M.*, Schwabe N.L.A., Moser M., Krogmann L. 2023. Black gold rush - Evaluating the efficiency of the Fractionator in separating Hymenoptera families in a meadow ecosystem over a two week period. Biodiv. Data. J. 11: e107051. doi: 10.3897/BDJ.11.e107051. | [journal] [pdf] |
Russo A.*, Mayjonade B., Frei D., Potente G., Kellenberger R. T., Frachon L., Copetti D., Studer B., Frey J. E., Grossniklaus U. & Schlüter P. M.* 2022. Low-input high-molecular-weight DNA extraction for long-read sequencing from plants of diverse families. Front. Plant Sci. 13: 883897. doi: 10.3389/fpls.2022.883897. Step-by-step Protocol HMW DNA extraction from diverse plants species for PacBio and Nanopore sequencing available here: dx.doi.org/10.17504/protocols.io.5t7g6rn | [journal] [pdf] [SI] |
Stein R.E., Nauerth B.H., Binmöller L., Zühl L., Loreth A., Reinert M., Ibberson D. & Schmidt A*. 2021. RH17 acts in repression of reproductive fate and autonomous seed coat development in sexual Arabidopsis. Dev. 148: dev198739. doi: 10.1242/dev.198739. Data: [RNA-Seq, SRA: PRJNA679030] | [journal][pdf][pdf+SI] |
| Krupp A., Bertsch B &, Spring O.* 2021. Costunolide influences germ tube orientation in sunflower broomrape – a first step toward understanding chemotropism. Front. Plant Sci. 12: 699068. doi: 10.3389/fpls.2021.699068. | [journal] [pdf] [SI] |
O'Brien M.J.*, Carbonell E.P., Losapio G., Schlüter P.M. & Schöb C.* 2021. Foundation species promote local adaptation and fine-scale distribution of herbaceous plants. J. Ecol. 109: 191-203. doi: 10.1111/1365-2745.13461. Data: [dryad doi: 10.5061/dryad.xksn02vcs] Code: [sourceforge: snpdist source] | [journal] [pdf] [SI] |
| Cozzolino S., Scopece G.*, Roma L. & Schlüter P.M. 2020. Different filtering strategies of Genotyping-By-Sequencing data provide complementary resolutions of species boundaries and relationships in a clade of sexually deceptive orchids. J. Syst. Evol. 58: 133-144. doi: 10.1111/jse.12493. | [journal] [pdf][SI] |
Piñeiro Fernández L.*, Byers K.J.R.P., Cai J., Sedeek K.E.M., Kellenberger R.T., Russo A., Qi W., Aquino Fournier C. & Schlüter P.M.* 2019. A phylogenomic analysis of the floral transcriptomes of sexually deceptive and rewarding European orchids, Ophrys and Gymnadenia. Front. Plant Sci. 10: 1553. doi: 10.3389/fpls.2019.01553. Data: [SRA:PRJNA574279 (Ophrys Illumina data)] [SRA:PRJNA504609 (Gymnadenia/Nigritella Illumina data)] [TSA:GHXI00000000 (O. iricolor s.l. transcriptome assembly) ] [TSA:GHXJ00000000 (O. sphegodes s.l. v.2 transcriptome assembly) ] [TSA:GHWX00000000 (O. insectifera transcriptome assembly) ] [TSA:GHWW00000000 (O. aymoninii transcriptome assembly) ] [TSA:GHXG00000000 (G. conopsea transcriptome assembly) ] [TSA:GHXE00000000 (G. densiflora transcriptome assembly) ] [TSA:GHXF00000000 (G. odoratissima transcriptome assembly) ] [TSA:GHXH00000000 (G. rhellicani transcriptome assembly) ] [Figshare:9944015 (O. iricolor s.l. transcriptome annotation stats) ] [Figshare:9944018 (O. sphegodes s.l. v.2 transcriptome annotation stats) ] [Figshare:9944006 (Gymnadenia cross-species transcriptome annotation stats) ] | [journal] [pdf][SI] |
Kellenberger R.T.*, Byers K.J.R.P., De Brito Francisco R.M., Staedler Y.M., LaFountain A.M., Schönenberger J., Schiestl F.P. & Schlüter P.M.* 2019. Emergence of a floral colour polymorphism by pollinator-mediated overdominance. Nat. Commun. 10: 63. doi: 10.1038/s41467-018-07936-x. Data: [µCT data: phaidra 912072] [UHPLC-MS/MS data: figshare 7321880] [Illumina RNA-Seq data: SRA:PRJNA504609] [GrMYB1 allele sequences: Genbank MK163677–MK163681] [GrANS1 allele sequences: GenBank MK163682–MK163685] [other data sets (including transcriptome assembly): figshare 7314731] Press & media (selection): [Nature Behind-The Paper blog] [UHOH press release] [F1000 recommendations] [der Standard (AT)] [Blick (CH)] [studium.at] [European News Agency] | [journal] [pdf] [SI] |
| Frey M.*, Klaiber I., Conrad J., Bersch A., Pateraki I., Ro D.-K. & Spring O. 2019. Characterization of CYP71AX36 from sunflower (Helianthus annuus L., Asteraceae). Sci. Rep. 9: 14295. doi: 10.1038/s41598-019-50520-6. | [journal] [pdf] [SI] |
| Padilla-González G.F., Frey M., Gómez-Zeledón J., Da Costa F.B,* & Spring O. 2019. Metabolomic and gene expression approaches reveal the developmental and environmental regulation of the secondary metabolism of yacón (Smallanthus sonchifolius, Asteraceae). Sci. Rep. 9:13178. doi: 10.1038/s41598-019-49246-2. | [journal] [pdf] [SI] |
Roma L., Cozzolino S.*, Schlüter P.M., Scopece G. & Cafasso D. 2018. The complete plastid genomes of Ophrys iricolor and O. sphegodes (Orchidaceae) and comparative analysis with other orchids. PLoS One 13: e0204174. doi: 10.1371/journal.pone.0204174. Data: [SRA:PRJNA471829/SRP148126 (plastid Illumina data)] [DDBJ:AP018716 (O. iricolor plastid genome assembly)] [DDBJ:AP018717 (O. sphegodes plastid genome assembly)] | [journal] [pdf] [combined SI pdf] |
Peer-reviewed Review and Opinion Pieces Since At Hohenheim
| Publication | Links |
|---|---|
| Frey M.*, Vahabi K., Cankar K., Lackus N.D., Padilla-Gonzalez F., Ro D.-K., Rieseberg L., Spring O. & Tissier A. 2024. Sesquiterpene lactones – insights into biosynthesis, regulation and signalling roles. Crit. Rev. Plant Sci. doi: 10.1080/07352689.2024.2307240. | [journal] [pdf] [SI] |
| Brownfield L.R., Figueiredo D.D., Borg M. & Schmidt A. 2023. Editorial: Plant development and reproduction at single cell and cell type-specific resolution. Front. Plant Sci. 14: 1261685. doi: 10.3389/fpls.2023.1261685. | [journal] [pdf] |
| Van der Niet T.*, Egan P. A. & Schlüter P.M. 2023. Evolutionarily inspired solutions to the crop pollination crisis. Trends Ecol. Evol. 38: 435-445. doi: 10.1016/j.tree.2022.12.010 | [journal][pdf][SI] |
Nürk N.M.*, Linder H.P.*, Onstein R.E., Larcombe M.J., Hughes C.E., Piñeiro Fernández L., Schlüter P.M., Valente L.M., Beierkuhnlein C., Cutts V., Donoghue M.J., Edwards E.J., Field R., Flantua S.G.A., Higgins S.I., Jentsch A., Liede-Schumann S. & Pirie M.D. 2020. Diversification in evolutionary arenas - assessment and synthesis. Ecol. Evol.10: 6163-6182. doi: 10.1002/ece3.6313. Data: [data & scripts: dryad 2bvq83bkx] | [journal][pdf] |
| Borsch T., Stevens A.-D., Häffner E., Güntsch A., Berendsohn W.G., Appelhans M.S., Barilaro C., Beszteri B., Blattner F.R., Bossdorf O., Dalitz H., Dressler S., Duque-Thüs R., Esser H.-J., Franzke A., Goetze D., Grein M., Grünert U. Hellwig F., Hentschel J., Hörandl E., Janßen T., Jürgens N., Kadereit G., Karisch T., Koch M.A., Müller F., Müller J., Ober D., Porembski S., Poschlod P., Printzen C., Röser M., Sack P., Schlüter P.M., Schmidt M., Schnittler M., Scholler M., Schultz M., Seeber E., Simmel J., Stiller M., Thiv M., Thüs H., Tkach N., Triebel D., Warnke U., Weibulat T., Wesche K., Yurkov A. & Zizka G. 2020. A complete digitization of German herbaria is possible, sensible and should be started now. Res. Ideas Outcomes 6: e50675. doi: 10.3897/rio.6.e50675. | [journal][pdf] |
| Schlüter P.M.* 2018. The magic of flowers, or: speciation genes and where to find them. Am. J. Bot. 105: 1957-1961. doi: 10.1002/ajb2.1193. | [journal][pdf] |
Peer-reviewed Original Research Papers Before Hohenheim
| Publication | Links |
|---|---|
Kellenberger R.T., Desurmont G.A., Schlüter P.M. & Schiestl F.P. 2018. Trans-generational inheritance of herbivory-induced phenotypic changes in Brassica rapa. Sci. Rep. 8: 3536. doi: 10.1038/s41598-018-21880-2. doi: 10.1038/s41598-018-21880-2. Data: [ZORA: 149519 (.xlsx data tables)] | [journal] [pdf] [SI] |
Kellenberger R.T., Schlüter P.M. & Schiestl F.P. 2016. Herbivore-induced DNA demethylation changes floral signalling and attractiveness to pollinators in Brassica rapa. PLoS One 11: e0166646. doi: 10.1371/journal.pone.0166646. Data: [dryad doi: 10.5061/dryad.rf452] | [journal] [pdf] [SI] |
Sedeek K.E.M., Whittle E.J., Guthörl D., Grossniklaus U., Shanklin J. & Schlüter P.M. 2016. Amino acid change in a plant desaturase enables mimicry of the pollinator’s sex pheromone. Curr. Biol. 26: 1505-1511. doi: 10.1016/j.cub.2016.04.018. Data: [RNA in situ hybridisation (high-resolution): dryad doi: 10.5061/dryad.698s5] [sequence data: GenBank KM485308-KM485309 (SAD4), KM485306-KM485307 (SAD5), KP184494 (SAD6)] | [journal] [pdf] [SI] [pdf w/SI] |
Xu S. & Schlüter P.M. 2015. Modeling the two-locus architecture of divergent pollinator adaptation: how variation in SAD paralogues affects fitness and evolutionary divergence in sexually deceptive orchids. Ecol. Evol. 5: 493-502. doi: 10.1002/ece3.1378. Data and scripts: [dryad doi: 10.5061/dryad.sp58m] | [journal] [pdf] [SI] |
Sun M., Schlüter P.M., Gross K. & Schiestl F.P. 2015. Floral isolation is the major reproductive barrier between a pair of rewarding orchid sister species. J. Evol. Biol. 28: 117-129. doi: 10.1111/jeb.12544. Data: [DNA sequence data: GenBank KP225165-KP225272 (ITS1, ITS2, AOMT, G3PDH, CHS)] | [journal] [pdf] [SI] |
Breitkopf H., Onstein R.E., Cafasso D., Schlüter P.M. & Cozzolino S. 2015. Multiple shifts to different pollinators fuelled rapid diversification in sexually deceptive Ophrys orchids. New Phytol. 207: 377-389. doi: 10.1111/nph.13219. Data: [BGP sequence data, GenBank KP148626-KP148662] [CAD sequence data, GenBank KP148663-KP148699] [FAD sequence data, GenBank KP148700-KP148736] [LACS sequence data, GenBank KP148589-KP148625] [LFY sequence data, GenBank KP148737-KP148773] [MYB equence data, GenBank KP148774-KP148810] | [journal] [pdf] [SI] |
Sedeek K.E.M., Scopece G., Staedler Y.M., Schönenberger J., Cozzolino S., Schiestl F.P. & Schlüter P.M. 2014. Genic rather than genome-wide differences between sexually deceptive Ophrys orchids with different pollinators. Mol. Ecol. 23: 6192-6205. doi: 10.1111/mec.12992. Data: [NCBI SRA: PRJNA257331 (GBS Illumina data)] [phaidra: 363510 (µCT data)] [dryad doi: 10.5061/dryad.05db4 (data and input files)] Code/software: [sourceforge: biOP/biOP4R] [FAMD/GbsPro] [fdist3] | [journal] [pdf] [SI] [further SI] |
Sedeek K.E.M., Qi W., Schauer M.A., Gupta A.K., Poveda L., Xu S., Liu Z.-J., Grossniklaus U., Schiestl F.P. & Schlüter P.M. 2013. Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive orchids. PLoS One 8: e64621. doi: 10.1371/journal.pone.0064621. Data: [MS/MS proteomics data: ProteomeXChange doi: 10.6019/PXD000069; PRIDE: 27721–27914] [EST library: NCBI BioSample: SAMN01882785; dbEST: LIBEST_028084; dbEST LIBEST_028084, IDs 77978749-77979571,GenBank accessions JZ163765-JZ164587] [Solexa+454 NGS data: NCBI SRA: SRA060767] [O. sphegodes s.l. transcriptome assembly v.1 (fasta), doi: 10.1371/journal.pone.0064621.s011] [transcriptome annotation v.1, doi: 10.1371/journal.pone.0064621.s012] | [journal] [pdf] [SI] |
Breitkopf H., Schlüter P.M., Xu S., Schiestl F.P., Cozzolino S. & Scopece G. 2013. Pollinator shifts between Ophrys sphegodes populations: might adaptation to different pollinators drive population divergence? J. Evol. Biol. 26: 2197-2208. doi: 10.1111/jeb.12216. Data: [AFLP data matrix; dryad, doi: 10.5061/dryad.c6n53] | [journal] [pdf] |
Xu S., Schlüter P.M., Grossniklaus U. & Schiestl F.P. 2012. The genetic basis of pollinator adaptation in a sexually deceptive orchid. PLoS Genet. 8: e1002889. doi: 10.1371/journal.pgen.1002889. Data: [sequences: GenBank JN413036-JN413078 (SAD1), JN412988-JN413035 (SAD2), JN412955-JN412987 (SAD3), JN412899-JN412954 (SAD4), JN412882-JN412896 & JX307700-JX307701 (SAD5), JN412855-JN412881 & JX307699 (SAD6)] | [journal] [pdf] [SI] |
| Xu S., Schlüter P.M., Scopece G., Breitkopf H., Gross K., Cozzolino S. & Schiestl F.P. 2011. Floral isolation is the main reproductive barrier among closely related sexually deceptive orchids. Evolution 65: 2606-2620. doi: 10.1111/j.1558-5646.2011.01323.x. | [journal] [pdf] [SI] |
Schlüter P.M., Xu S., Gagliardini V., Whittle E.J., Shanklin J., Grossniklaus U. & Schiestl F.P. 2011. Stearoyl-acyl carrier protein desaturases are associated with floral isolation in sexually deceptive orchids. Proc. Natl. Acad. Sci. USA 108: 5696-5701. doi: 10.1073/pnas.1013313108. Data: [sequences: G3PDH, GenBank: FR688105; SAD1-SAD3, GenBank: FR688106-FR688110] | [journal] [pdf] [SI] |
Schlüter P.M., Ruas P.M., Kohl G., Ruas C.F., Stuessy T.F. & Paulus H.F. 2011. Evidence for progenitor-derivative speciation in sexually deceptive orchids. Ann. Bot. 108: 895-906. doi: 10.1093/aob/mcr239. Data: [GenBank: AM489419-AM489436, FR872510-FR872578] | [journal] [pdf] [SI] |
| Stökl J., Schlüter P.M., Stuessy T.F., Paulus H.F., Fraberger R., Erdmann D., Schulz C., Francke W., Assum G. & Ayasse M. 2009. Speciation in sexually deceptive orchids: pollinator-driven selection maintains discrete odour phenotypes in hybridizing species. Biol. J. Linn. Soc. 98: 439-451. doi: 10.1111/j.1095-8312.2009.01279.x. | [journal] [pdf] [SI] |
| Schlüter P.M., Ruas P.M., Kohl G., Ruas C.F., Stuessy T.F. & Paulus H.F. 2009. Genetic patterns and pollination in Ophrys iricolor and O. mesaritica (Orchidaceae): sympatric evolution by pollinator shift. Bot. J. Linn. Soc. 159: 583-598. doi: 10.1111/j.1095-8339.2009.00957.x. | [journal] [pdf] |
Schauer S.E., Schlüter P.M., Baskar R., Gheyselinck J., Bolaños A., Curtis M.D. & Grossniklaus U. 2009. Intronic regulatory elements determine the divergent expression patterns of AGAMOUS-LIKE6 subfamily members in Arabidopsis. Plant J. 59: 987-1000. doi: 10.1111/j.1365-313X.2009.03928.x. Data: [GenBank: GQ117273-GQ117280] | [journal] [pdf] [SI] |
| Stökl J., Schlüter P.M., Stuessy T.F., Paulus H.F., Assum G. & Ayasse M. 2008. Scent variation and hybridization cause the displacement of a sexually deceptive orchid species. Am. J. Bot. 95: 472-481. doi: 10.3732/ajb.95.4.472. | [journal] [pdf] |
Ruas C.F., Weiss-Schneeweiss H., Stuessy T.F., Samuel M.R., Pedrosa-Harand A., Tremetsberger K., Ruas P.M., Schlüter P.M., Ortiz Herrera M.Á., König C. & Matzenbacher N.I. 2008. Characterization, genomic organization and chromosomal distribution of Ty1-copia retrotransposons in species of Hypochaeris (Asteraceae). Gene 412: 39-49. doi: 10.1016/j.gene.2008.01.009. | [journal] [pdf] [SI] |
| Schlüter P.M., Soto Arenas M.A. & Harris S.A. 2007. Genetic variation in Vanilla planifolia (Orchidaceae). Econ. Bot. 61: 328-336. doi: 10.1663/0013-0001(2007)61[328:GVIVPO]2.0.CO;2. | [journal] [pdf] |
| Schlüter P.M., Ruas P.M., Kohl G., Ruas C.F., Stuessy T.F. & Paulus H. F. 2007. Reproductive isolation in the Aegean Ophrys omegaifera complex (Orchidaceae). Plant Syst. Evol. 267: 105-119. doi: 10.1007/s00606-007-0557-7. | [journal] [pdf] |
| Schlüter P.M., Kohl G., Stuessy T.F. & Paulus H.F. 2007. A screen of low-copy nuclear genes reveals the LFY gene as phylogenetically informative in closely related species of orchids (Ophrys). Taxon 56: 493-504. doi: 10.1002/tax.562019. | [journal] [pdf] |
| Stuessy T.F., Jakubowsky G., Salguero Gómez R., Pfosser M.F., Schlüter P.M., Fer T., Sun B.-Y. & Kato H. 2006. Anagenetic evolution in island plants. J. Biogeogr. 33: 1259-1265. doi: 10.1111/j.1365-2699.2006.01504.x. | [journal] [pdf] |
Schlüter P.M. & Harris S.A. 2006. Analysis of multilocus fingerprinting data sets containing missing data. Mol. Ecol. Notes 6: 569-572. doi: 10.1111/j.1471-8286.2006.01225.x. Software: [FAMD (Fingerprint Analysis with Missing Data) software is available here.] | [journal] [pdf] |
Pfosser M.F., Jakubowsky G., Schlüter P.M., Fer T., Kato H., Stuessy T.F. & Sun B.-Y. 2006. Evolution of Dystaenia takesimana (Apiaceae), endemic to Ullung Island, Korea. Plant Syst. Evol. 256: 159-170. doi: 10.1007/s00606-005-0374-9. Data: [sequence data: Genbank AM109907–AM109921] | [journal] [pdf] |
Kramer E.M., di Stilio V.S. & Schlüter P.M. 2003. Complex patterns of gene duplication in the APETALA3 and PISTILLATA lineages of the Ranunculaceae. Int. J. Plant Sci. 164: 1-11. doi: 10.1086/344694. Data: [paleoAP3 alignment (nexus format)] [PI alignment (nexus format)][sequence data: GenBank AY162835–AY162906] | [journal] [pdf] [SI] |
Peer-reviewed Review and Opinion Pieces Before Hohenheim
| Publication | Links |
|---|---|
| Rogers S.M., Xu S., Schlüter P.M. 2017. Introduction: integrative molecular ecology is rapidly advancing the study of adaptation and speciation. Mol. Ecol. 26: 1-6. doi: 10.1111/mec.13947. | [journal] [pdf] |
| Byers K.J.R.P., Xu S. & Schlüter P.M. 2017. Molecular mechanisms of adaptation and speciation: why do we need an integrative approach? Mol. Ecol. 26: 277-290. doi: 10.1111/mec.13678. | [journal] [pdf] |
| Xu S., Schlüter P.M. & Schiestl F.P. 2012. Pollinator-driven speciation in sexually deceptive orchids. Int. J. Ecol. 2012: Article ID 285081. doi: 10.1155/2012/285081. | [journal] [pdf] [SI] |
| Schiestl F.P. & Schlüter P.M. 2009. Floral isolation, specialized pollination, and pollinator behavior in orchids. Annu. Rev. Entomol. 54: 425-446. doi: 10.1146/annurev.ento.54.110807.090603. | [journal] [pdf] |
| Schlüter P.M. & Schiestl F.P. 2008. Molecular mechanisms of floral mimicry in orchids. Trends Plant Sci. 13: 288-235. doi: 10.1016/j.tplants.2008.02.008. | [journal] [pdf] |
| Schlüter P.M., Stuessy T.F. & Paulus H.F. 2005. Making the first step: Practical considerations for the isolation of low-copy nuclear sequence markers. Taxon 54: 766-770. doi: 10.2307/25065432. | [journal] [pdf] |
Items in Pre-Print Archives
The following items have been deposited in pre-print archives.
| Pre-print item | Pub |
|---|---|
| Goedderz S.*, Clements M.A., Bent S.J., Nicholls J.A., Patel V.S., Crayn D.M., Schlüter P.M. & Nargar K.* 2024. Plastid phylogenomics reveals evolutionary relationships in the mycoheterotrophic orchid genus Dipodium and provides insights into plastid gene degeneration. bioRxiv doi: 10.1101/2024.02.05.578113. | [text] [pdf] [SI] |
| Russo A.*, Alessandrini M., El Baidouri M., Frei D., Galise T.R., Gaidusch L., Oertel H.F., Garcia Morales S.E., Potente G., Tian Q., Smetanin D., Bertrand J.A.M., Onstein R.E., Panaud O., Frey J.E., Cozzolino S., Wicker T., Xu S., Grossniklaus U. & Schlüter P.M.* 2023. The genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and adaptation to pollinators. Research Square doi: 10.21203/rs.3.rs-3463148/v1. | [doi] |
Nürk N.M., Linder H.P., Onstein R.E., Larcombe M.J., Hughes C.E., Piñeiro Fernández L., Schlüter P.M., Valente L.M., Beierkuhnlein C., Cutts V., Donoghue M.J., Edwards E.J., Field R., Flantua S.G.A., Higgins S.I., Jentsch A., Liede-Schumann S. & Pirie M.D. 2019. Diversification in evolutionary arenas - assessment and synthesis. bioRxiv doi: 10.1101/636803. | [doi] |